Combinatorics on partial word correlations

Partial words are strings over a finite alphabet that may contain a number of “do not know” symbols. In this paper, we consider the period and weak period sets of partial words of length n over a finite alphabet, and study the combinatorics of specific representations of them, called correlations, which are binary and ternary vectors of length n indicating the periods and weak periods. We characterize precisely which vectors represent the period and weak period sets of partial words and prove that all valid correlations may be taken over the binary alphabet. We show that the sets of all such vectors of a given length form distributive lattices under suitably defined partial orderings. We show that there is a well-defined minimal set of generators for any binary correlation of length n and demonstrate that these generating sets are the primitive subsets of { 1 , 2 , … , n − 1 } . We also investigate the number of partial word correlations of length n. Finally, we compute the population size, that is, the number of partial words sharing a given correlation, and obtain recurrences to compute it. Our results generalize those of Guibas, Odlyzko, Rivals and Rahmann.