Title of article
FIVE DIATOM SPECIES IDENTIFIED BY USING POTENTIALAPPLICATION OF NEXT GENERATION DNA SEQUENCING
Author/Authors
Al-Meshhdany, WarqaaYehia University of Baghdad - Baghdad, Iraq , Hassan, Fikrat M Department of Biology - College of Science for Women University of Baghdad - Baghdad, Iraq
Pages
23
From page
39
To page
61
Abstract
Molecular barcoding was widely recognized as a powerful tool for the identification of organisms during the past decade;the aim of this study isto use the molecular approach to identify the diatoms by using the environmental DNA. The diatomspecimens were taken from Tigris River. Theenvironmental DNA(e DNA) extraction and analysis of sequences using the Next GenerationSequencing (NGS) method showed the highest percentage of epipelicdiatomgeneraincludingAchnanthidiumminutissimum(Kützing) Czarnecki, 1994 (21.1%), CocconeisplacentulaEhrenberg, 1838(21.3%) and Nitzschiapalea(Kützing) W. Smith, 1856 (16.3%). Five species of diatoms:Achnanthidiumminutissimum;Fistuliferasaprophila(Lange-Bertalot&Bonik)Lange-Bertalot, 1997;Gomphonemapumilum(Grunow) E. Reichardt&Lange-Bertalot, 1991;NaviculavenetaKützing, 1844andThalassiosirapseudonanaHasleHeimdal, 1970were registered in NCBIunder the accession numbers as follows:MN749640.1, MN749641.1, MN749642.1, MN749643.1 and MN749646.1for the first time;while the two algaeFistuliferasaprophilaandThalassiosirapseudonanaare regarded as a newrecord to algal flora in Iraq.The environmental DNA study willbe a catalyst fornew studies of biodiversity and environmental studies in Iraq and the region.
Keywords
Algae , Diatoms , Edema , Freshwater , NGS , Tigris River
Journal title
Bulletin of the Iraq Natural History Museum
Serial Year
2020
Record number
2603837
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