DocumentCode
1224132
Title
Efficient Fully Implicit Time Integration Methods for Modeling Cardiac Dynamics
Author
Ying, Wenjun ; Rose, Donald J. ; Henriquez, Craig S.
Author_Institution
Dept. of Math. Sci., Michigan Technol. Univ., Houghton, MI
Volume
55
Issue
12
fYear
2008
Firstpage
2701
Lastpage
2711
Abstract
Implicit methods are well known to have greater stability than explicit methods for stiff systems, but they often are not used in practice due to perceived computational complexity. This paper applies the backward Euler (BE) method and a second-order one-step two-stage composite backward differentiation formula (C-BDF2) for the monodomain equations arising from mathematically modeling the electrical activity of the heart. The C-BDF2 scheme is an L-stable implicit time integration method and easily implementable. It uses the simplest forward Euler and BE methods as fundamental building blocks. The nonlinear system resulting from application of the BE method for the monodomain equations is solved for the first time by a nonlinear elimination method, which eliminates local and nonsymmetric components by using a Jacobian-free Newton solver, called Newton--Krylov solver. Unlike other fully implicit methods proposed for the monodomain equations in the literature, the Jacobian of the global system after the nonlinear elimination has much smaller size, is symmetric and possibly positive definite, which can be solved efficiently by standard optimal solvers. Numerical results are presented demonstrating that the C-BDF2 scheme can yield accurate results with less CPU times than explicit methods for both a single patch and spatially extended domains.
Keywords
Newton method; bioelectric phenomena; biology computing; cardiology; Jacobian-free Newton solver; Newton--Krylov solver; backward Euler method; cardiac dynamics modeling; composite backward differentiation formula; computational complexity; heart electrical activity; implicit methods; monodomain equations; time integration; Biological materials; Biomembranes; Computer science; Couplings; Differential equations; Heart; Jacobian matrices; Nonlinear equations; Nonlinear systems; Partial differential equations; Stability; USA Councils; C-BDF2; Composite backward differentiation formula (C-BDF2); Reaction-Diffusion equation; composite backward differentiation formula; fully implicit methods; monodomain equations; reaction--diffusion equation; transmembrane potential; Computer Simulation; Finite Element Analysis; Heart Conduction System; Membrane Potentials; Models, Cardiovascular; Myocardial Contraction; Myocytes, Cardiac; Nonlinear Dynamics; Numerical Analysis, Computer-Assisted; Systems Integration;
fLanguage
English
Journal_Title
Biomedical Engineering, IEEE Transactions on
Publisher
ieee
ISSN
0018-9294
Type
jour
DOI
10.1109/TBME.2008.925673
Filename
4524954
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