DocumentCode
1415336
Title
A Temporal Pattern Search Algorithm for Personal History Event Visualization
Author
Wang, Taowei David ; Deshpande, Amol ; Shneiderman, Ben
Author_Institution
Partners HealthCare, Charlestown, MA, USA
Volume
24
Issue
5
fYear
2012
fDate
5/1/2012 12:00:00 AM
Firstpage
799
Lastpage
812
Abstract
We present Temporal Pattern Search (TPS), a novel algorithm for searching for temporal patterns of events in historical personal histories. The traditional method of searching for such patterns uses an automaton-based approach over a single array of events, sorted by time stamps. Instead, TPS operates on a set of arrays, where each array contains all events of the same type, sorted by time stamps. TPS searches for a particular item in the pattern using a binary search over the appropriate arrays. Although binary search is considerably more expensive per item, it allows TPS to skip many unnecessary events in personal histories. We show that TPS´s running time is bounded by O(m2n lg(n)), where m is the length of (number of events) a search pattern, and n is the number of events in a record (history). Although the asymptotic running time of TPS is inferior to that of a nondeterministic finite automaton (NFA) approach (O(mn)), TPS performs better than NFA under our experimental conditions. We also show TPS is very competitive with Shift-And, a bit-parallel approach, with real data. Since the experimental conditions we describe here subsume the conditions under which analysts would typically use TPS (i.e., within an interactive visualization program), we argue that TPS is an appropriate design choice for us.
Keywords
data visualisation; finite automata; medical information systems; pattern matching; Lifelines2 visualization tool; NFA approach; O(m2n lg(n)) problem; Shift-And approach; automaton-based approach; binary search; bit-parallel approach; electronic health records; event array; interactive visualization program; nondeterministic finite automaton; personal history event visualization; temporal pattern search algorithm; time stamp; Algorithm design and analysis; Arrays; Data visualization; Doped fiber amplifiers; History; Indexes; Pattern matching; Pattern matching; graphical user interfaces.; information visualization; temporal event data;
fLanguage
English
Journal_Title
Knowledge and Data Engineering, IEEE Transactions on
Publisher
ieee
ISSN
1041-4347
Type
jour
DOI
10.1109/TKDE.2010.257
Filename
5677518
Link To Document