• DocumentCode
    143783
  • Title

    Phylogenetic analysis using Bayesian model

  • Author

    Wei Lu ; Hanrahan, Mike

  • Author_Institution
    Dept. of Comput. Sci., USNH, Keene, NH, USA
  • fYear
    2014
  • fDate
    3-5 April 2014
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    Bayesian inference has been widely applied for phylogenetic and phyloinformatic analysis in recent years. In this paper we build up a high performance computing platform using OpenMPI with free-cost open source Ubuntu Linux operating systems, and then apply the Bayesian inference model to construct a phylogenetic tree of various biological species based on similarities and differences in their physical and genetic characteristics. A case study is also conducted and the experimental evaluation results to show that our cluster platform has achieved a good performance in the terms of time complexity when analyzing the molecular data using Bayesian model, leading a pilot inter-disciplinary Bioinformatics education program in between Computer Science and Biology.
  • Keywords
    Bayes methods; bioinformatics; evolution (biological); genetics; trees (mathematics); Bayesian inference; Bayesian model; OpenMPI; biological species; cluster platform; free-cost open source Ubuntu Linux operating systems; genetic characteristics; high performance computing platform; molecular data; phylogenetic analysis; phylogenetic tree; phyloinformatic analysis; physical characteristics; pilot interdisciplinary bioinformatics education program; time complexity; Bayes methods; Biological system modeling; Linux; Markov processes; Monte Carlo methods; Phylogeny; linux; operating system; phylogenetics; phyloinformatics;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    American Society for Engineering Education (ASEE Zone 1), 2014 Zone 1 Conference of the
  • Conference_Location
    Bridgeport, CT
  • Print_ISBN
    978-1-4799-5232-8
  • Type

    conf

  • DOI
    10.1109/ASEEZone1.2014.6820677
  • Filename
    6820677