• DocumentCode
    1588200
  • Title

    Modeling and Verifying WNT Signaling Pathway

  • Author

    Xu, Xian ; Yu, Yanbin

  • Author_Institution
    Shanghai Jiao Tong Univ., Shanghai
  • Volume
    2
  • fYear
    2007
  • Firstpage
    319
  • Lastpage
    323
  • Abstract
    WNT signaling pathway is an important pathway in the development and disease forming of a variety of animals, concerning such processes as hematopoiesis and oncogenesis. In this paper we use quantitative approach to study the canonical pathway of WNT signaling. We first present the basic knowledge of the WNT signaling pathway, including the necessary elements on the pathway, then in troduce the modeling method, the tissue P system, which is a computational device inspired from the behavior of living cells. After that we construct the model of the WNT signaling pathway using the tissue P system. Moreover, we implement the model using Maude, a rewriting logic based interpreter software. Provided with the model implementation, we model check some critical properties on several nodes of the WNT signaling pathway, to show the effect of the modeling and implementation. We draw the conclusion in the end.
  • Keywords
    biology computing; diseases; program interpreters; program verification; rewriting systems; Maude; WNT signaling pathway; disease forming; hematopoiesis; interpreter software; oncogenesis; rewriting logic; tissue P system; Animal structures; Biological system modeling; Biology; Communication system control; Computer science; Control systems; Diseases; Logic devices; Power system modeling; Signal processing; Modeling; Signaling pathway; Tissue P systems.; Verification; WNT;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Natural Computation, 2007. ICNC 2007. Third International Conference on
  • Conference_Location
    Haikou
  • Print_ISBN
    978-0-7695-2875-5
  • Type

    conf

  • DOI
    10.1109/ICNC.2007.476
  • Filename
    4344368