• DocumentCode
    1704173
  • Title

    Robustness of minimal biochemical oscillators

  • Author

    Ibig, Ariane ; Stelling, Jörg

  • Author_Institution
    Inst. of Comput. Sci., ETH Zurich, Zurich
  • fYear
    2008
  • Firstpage
    148
  • Lastpage
    153
  • Abstract
    Robustness-the insensitivity to perturbations-is a hallmark of biological systems and it could provide a key to understanding design principles of complex cellular networks. However, current methods for the characterization of parametric robustness in (dynamic models of) biological systems are insufficient because of their local nature and the high dimensionality of the corresponding parameter spaces. Here, we propose first methods for a quantitative characterization of geometries in parameter space that are related to qualitative systems behavior. Using minimal biochemical oscillators as examples, we show that such approaches can provide detailed insight into relations between network structures, behavior, and robustness properties, which is not possible with traditional sampling-based methods. We expect that scaling and resolution of the algorithms could be vastly improved by using more advanced concepts from computational geometry.
  • Keywords
    biochemistry; biology computing; computational complexity; molecular biophysics; biochemical oscillators; biological systems; computational geometry; network structures; parameter spaces; parametric robustness; quantitative characterization; Biological system modeling; Biological systems; Biology computing; Circuit synthesis; Computational geometry; Computer networks; Feedback; Oscillators; Robustness; Uncertainty;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Communications, Control and Signal Processing, 2008. ISCCSP 2008. 3rd International Symposium on
  • Conference_Location
    St Julians
  • Print_ISBN
    978-1-4244-1687-5
  • Electronic_ISBN
    978-1-4244-1688-2
  • Type

    conf

  • DOI
    10.1109/ISCCSP.2008.4537209
  • Filename
    4537209