DocumentCode
1704173
Title
Robustness of minimal biochemical oscillators
Author
Ibig, Ariane ; Stelling, Jörg
Author_Institution
Inst. of Comput. Sci., ETH Zurich, Zurich
fYear
2008
Firstpage
148
Lastpage
153
Abstract
Robustness-the insensitivity to perturbations-is a hallmark of biological systems and it could provide a key to understanding design principles of complex cellular networks. However, current methods for the characterization of parametric robustness in (dynamic models of) biological systems are insufficient because of their local nature and the high dimensionality of the corresponding parameter spaces. Here, we propose first methods for a quantitative characterization of geometries in parameter space that are related to qualitative systems behavior. Using minimal biochemical oscillators as examples, we show that such approaches can provide detailed insight into relations between network structures, behavior, and robustness properties, which is not possible with traditional sampling-based methods. We expect that scaling and resolution of the algorithms could be vastly improved by using more advanced concepts from computational geometry.
Keywords
biochemistry; biology computing; computational complexity; molecular biophysics; biochemical oscillators; biological systems; computational geometry; network structures; parameter spaces; parametric robustness; quantitative characterization; Biological system modeling; Biological systems; Biology computing; Circuit synthesis; Computational geometry; Computer networks; Feedback; Oscillators; Robustness; Uncertainty;
fLanguage
English
Publisher
ieee
Conference_Titel
Communications, Control and Signal Processing, 2008. ISCCSP 2008. 3rd International Symposium on
Conference_Location
St Julians
Print_ISBN
978-1-4244-1687-5
Electronic_ISBN
978-1-4244-1688-2
Type
conf
DOI
10.1109/ISCCSP.2008.4537209
Filename
4537209
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