DocumentCode
1785078
Title
Prediction of hot regions in protein-protein interaction based on the Gi statistics and cascade classifier
Author
Bingqin Tan ; Xiaolong Zhang
Author_Institution
Hubei Key Lab. of Intell. Inf. Process. & Real-time Ind. Syst., Wuhan Univ. of Sci. & Technol., Wuhan, China
fYear
2014
fDate
2-5 Nov. 2014
Firstpage
23
Lastpage
30
Abstract
There is an important relationship between the stability of protein complex and hot region. Research has shown that in protein-protein interaction (PPI), residues are denser around the hot region. Therefore, this paper proposed an algorithm based on Gi statistics, regional division rule and regional amplification principle to form residue dense region (RDR); Then, according to the results of cascade classifier composed of Naive Bayes and Back-Propagation (BP) neural network classifier, non-hotspot residues in RDRs were removed; At length, we used binding free energy change value calculated from Robetta Server to modify predicted hot regions. The experimental results showd that the proposed method can effectively improve the prediction accuracy on hot regions.
Keywords
Bayes methods; backpropagation; biochemistry; bioinformatics; bonds (chemical); cascade systems; classification; free energy; molecular biophysics; molecular configurations; neural nets; proteins; statistical analysis; BP neural network classifier; Gi statistics; PPI; RDR nonhotspot residue removal; Robetta server; back-propagation neural network classifier; binding free energy change value calculation; cascade classifier; hot region prediction accuracy; naive Bayes classifier; predicted hot region modification; protein complex stability; protein-protein interaction; regional amplification principle; regional division rule; residue dense region; Accuracy; Correlation; Educational institutions; Neural networks; Prediction algorithms; Protein engineering; Proteins; Gi statistics; Robatta; cascade classifier; hot region; protein-protein interaction;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on
Conference_Location
Belfast
Type
conf
DOI
10.1109/BIBM.2014.6999293
Filename
6999293
Link To Document