DocumentCode
1796184
Title
Parallel diffrential evolution clustering algorithm based on MapReduce
Author
Daoudi, Meroua ; Hamena, Soumiya ; Benmounah, Zakaria ; Batouche, Mohamed
Author_Institution
Dept. of Comput. Sci., Constantine 2 Univ., Constantine, Algeria
fYear
2014
fDate
11-14 Aug. 2014
Firstpage
337
Lastpage
341
Abstract
Cancer research is a challenging and competitive field. The study of gene expression data has enabled the discovery of unknown types of cancer using unsupervised learning. However, genomic sequence data are increasing in an exponential manner. Indeed, since 2011 the global annual sequencing capacity is estimated to be quadrillions of bases and counting. To cope with this issue, we propose, in this paper, the implementation of differential evolution clustering algorithm using MapReduce methodology in order to deal with big data. The proposed algorithm consists in three consecutive levels. Experiments were conducted on 18 real gene expression data sets. The obtained results have shown that our approach is effective and competes with existing algorithms.
Keywords
Big Data; cancer; evolutionary computation; genomics; medical computing; parallel algorithms; pattern clustering; unsupervised learning; MapReduce methodology; big data; cancer research; differential evolution clustering algorithm; gene expression data; genomic sequence data; parallel differential evolution clustering algorithm; unsupervised learning; Algorithm design and analysis; Clustering algorithms; Evolution (biology); Gene expression; Partitioning algorithms; Vectors; Data Clustering; Diffrential Evolution; Gene Expression Analysis; MapReduce; Parallel Processing;
fLanguage
English
Publisher
ieee
Conference_Titel
Soft Computing and Pattern Recognition (SoCPaR), 2014 6th International Conference of
Conference_Location
Tunis
Type
conf
DOI
10.1109/SOCPAR.2014.7008029
Filename
7008029
Link To Document