DocumentCode
1960694
Title
A novel 3D graphical representation of DNA and its application
Author
Zhou, Jin-yu ; Xiao, Qian-jun ; Deng, Zong-gang ; Ouyang, Zhang-dong
Author_Institution
Dept. of Math., Hunan Vocational Coll. of Sci. & Technol., Xiangtan, China
Volume
4
fYear
2010
fDate
9-11 July 2010
Firstpage
1
Lastpage
4
Abstract
A 3D graphical representation of DNA sequence has been derived from chaos game representation of DNA sequence. The 3D graphical representation also avoids loss of information. According to classifications of four bases of DNA sequence we obtain three characteristic curves. The geometrical centers and fluctuation of three curves have been grouped into a twelve-component vector to represent the DNA sequence. The Euclidean distances among introduced vectors are applied to characterize and compare the coding sequences of the first exon of β-globin gene of 11 different species.
Keywords
DNA; geometry; sequences; 3D graphical representation; DNA sequence; Euclidean distances; chaos game representation; coding sequences; Bovine; DNA; Humans; Logic gates; Mice; Rabbits; Three dimensional displays; Fluctuation; Geometrical Centers; Graphical Representation; Similarity Analysis;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer Science and Information Technology (ICCSIT), 2010 3rd IEEE International Conference on
Conference_Location
Chengdu
Print_ISBN
978-1-4244-5537-9
Type
conf
DOI
10.1109/ICCSIT.2010.5565168
Filename
5565168
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