• DocumentCode
    2075261
  • Title

    RN-Cluster: Discovering Coherent Biclusters Which is Robust to Noise

  • Author

    Ahn, Jaegyoon ; Yoon, Youngmi ; Park, Sanghyun

  • Author_Institution
    Comput. Sci. Dept., Yonsei Univ., Yonsei
  • fYear
    2008
  • fDate
    June 29 2008-July 5 2008
  • Firstpage
    131
  • Lastpage
    136
  • Abstract
    A bicluster is a subset of genes that show similar behavior within a subset of conditions. Biclustering algorithm is a useful tool to uncover groups of genes involved in the same cellular process and groups of conditions which take place in this process. We are proposing a polynomial time algorithm to identify functionally highly correlated biclusters. Our algorithm identifies (1) the gene set that follows additive, multiplicative, and combined patterns simultaneously that allow high level of noise, (2) the multiple, possibly overlapped, and diverse gene sets, (3) biclusters with negatively correlated as well as positively correlated gene set simultaneously, and (4) gene sets whose functional association is strongly high. We validated the level of functional association of our method, and compared with current methods using GO.
  • Keywords
    biology computing; cellular biophysics; computational complexity; data mining; genetics; molecular biophysics; pattern clustering; RN-Cluster; cellular process; coherent bicluster discovery; gene subset; negatively correlated gene set; polynomial time algorithm; positively correlated gene set; Additive noise; Approximation algorithms; Bioinformatics; Clustering algorithms; Computer science; Gene expression; Information technology; Multi-stage noise shaping; Noise level; Noise robustness; Biclustering; Co-clustering; Data mining; Gene expression data analysis; Knowledge discovery; Microarray analysis; Noise;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biocomputation, Bioinformatics, and Biomedical Technologies, 2008. BIOTECHNO '08. International Conference on
  • Conference_Location
    Bucharest
  • Print_ISBN
    978-0-7695-3191-5
  • Electronic_ISBN
    978-0-7695-3191-5
  • Type

    conf

  • DOI
    10.1109/BIOTECHNO.2008.8
  • Filename
    4561147