DocumentCode
2442464
Title
Random-access compression of annotated DNA sequences
Author
Korodi, Gergely ; Tabus, Ioan
Author_Institution
Inst. of Signal Process., Tampere Univ. of Technol., Tampere
fYear
2006
fDate
28-30 May 2006
Firstpage
69
Lastpage
70
Abstract
This article investigates the efficiency of randomly accessible coding for annotated genome files and compares it to universal coding. The result is an encoder which has excellent compression efficiency on annotated genome sequences, provides instantaneous access to functional elements in the file, and thus it serves as a basis for further applications, such as indexing and searching for specified feature entries.
Keywords
DNA; biology computing; data compression; encoding; file organisation; random processes; sequences; encoder; functional element; random-access DNA sequence compression; Bioinformatics; Biological information theory; Biomedical signal processing; DNA; Genomics; Indexing; Information retrieval; Probability distribution; Sequences; Training data;
fLanguage
English
Publisher
ieee
Conference_Titel
Genomic Signal Processing and Statistics, 2006. GENSIPS '06. IEEE International Workshop on
Conference_Location
College Station, TX
Print_ISBN
1-4244-0384-7
Electronic_ISBN
1-4244-0385-5
Type
conf
DOI
10.1109/GENSIPS.2006.353160
Filename
4161781
Link To Document