DocumentCode
2580938
Title
A Bayesian approach to virus-gene expression time course data
Author
Chang, Shou ; Wen, Chi-Chung ; Wu, Yuh-Jenn ; Gupta, Pramod K. ; Shih Sheng Jiang ; Juang, Jyh-Lyh ; Hsiung, Chao A.
Author_Institution
President´´s Lab. Nat. Health Res. Inst., Taipei, Taiwan
fYear
2005
fDate
15-16 Aug. 2005
Abstract
Summary form only given. We propose a Bayesian regression model to study the time course expression profile of a virus-gene using data from micro-array experiments. Since the time course expression level of a virus gene in a cell is typically constantly zero initially, increasing for a while, and then decreasing, we consider regression model in which the mean function satisfies the above shape restriction. The prior is introduced through Bernstein polynomials. We note that Bernstein polynomial provides an excellent tool to incorporate geometric information into priors for Bayesian inference. We use the Metropolis-Hastings-Green algorithm to generate the posterior distribution and use the posterior mode as the estimate. This method is illustrated in simulation studies and analysis of real datasets. In this extended abstract, we include the expression profile of one of the genes of Baculavirus, obtained from the Bayesian method of this work. In this paper, the author discussed applications of the expression profiles in the study of the virus genome.
Keywords
Bayes methods; genetics; microorganisms; polynomials; regression analysis; Baculavirus; Bayesian approach; Bayesian inference; Bayesian regression model; Bernstein polynomials; Metropolis-Hastings-Green algorithm; geometric information; mean function; posterior distribution; time course expression profile; virus genome; virus-gene expression time course data; Analytical models; Bayesian methods; Bioinformatics; Chaos; Data analysis; Genomics; Inference algorithms; Laboratories; Polynomials; Shape;
fLanguage
English
Publisher
ieee
Conference_Titel
Emerging Information Technology Conference, 2005.
Print_ISBN
0-7803-9328-7
Type
conf
DOI
10.1109/EITC.2005.1544357
Filename
1544357
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