• DocumentCode
    2580938
  • Title

    A Bayesian approach to virus-gene expression time course data

  • Author

    Chang, Shou ; Wen, Chi-Chung ; Wu, Yuh-Jenn ; Gupta, Pramod K. ; Shih Sheng Jiang ; Juang, Jyh-Lyh ; Hsiung, Chao A.

  • Author_Institution
    President´´s Lab. Nat. Health Res. Inst., Taipei, Taiwan
  • fYear
    2005
  • fDate
    15-16 Aug. 2005
  • Abstract
    Summary form only given. We propose a Bayesian regression model to study the time course expression profile of a virus-gene using data from micro-array experiments. Since the time course expression level of a virus gene in a cell is typically constantly zero initially, increasing for a while, and then decreasing, we consider regression model in which the mean function satisfies the above shape restriction. The prior is introduced through Bernstein polynomials. We note that Bernstein polynomial provides an excellent tool to incorporate geometric information into priors for Bayesian inference. We use the Metropolis-Hastings-Green algorithm to generate the posterior distribution and use the posterior mode as the estimate. This method is illustrated in simulation studies and analysis of real datasets. In this extended abstract, we include the expression profile of one of the genes of Baculavirus, obtained from the Bayesian method of this work. In this paper, the author discussed applications of the expression profiles in the study of the virus genome.
  • Keywords
    Bayes methods; genetics; microorganisms; polynomials; regression analysis; Baculavirus; Bayesian approach; Bayesian inference; Bayesian regression model; Bernstein polynomials; Metropolis-Hastings-Green algorithm; geometric information; mean function; posterior distribution; time course expression profile; virus genome; virus-gene expression time course data; Analytical models; Bayesian methods; Bioinformatics; Chaos; Data analysis; Genomics; Inference algorithms; Laboratories; Polynomials; Shape;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Emerging Information Technology Conference, 2005.
  • Print_ISBN
    0-7803-9328-7
  • Type

    conf

  • DOI
    10.1109/EITC.2005.1544357
  • Filename
    1544357