• DocumentCode
    2592417
  • Title

    LZW mutual-information-maximizing input clustering algorithm

  • Author

    Watchanupaporn, Orawan ; Suwannik, Worasait

  • Author_Institution
    Dept. of Comput. Sci., Kasetsart Univ., Bangkok, Thailand
  • Volume
    4
  • fYear
    2011
  • fDate
    15-17 Oct. 2011
  • Firstpage
    2273
  • Lastpage
    2276
  • Abstract
    This paper proposes a new evolutionary algorithm called LZWMIMIC. The proposed algorithm combines the LZW compressed chromosome encoding and Mutual-Information-Maximizing Input Clustering (MIMIC) algorithm. The advantage of LZW encoding is that it reduces the search space thus speeds up the evolutionary search. The advantage of MIMIC is that it can solve complex problem by finding a relationship between gene positions. The performance of the original MIMIC and LZWMIMIC are compared on standard benchmark problems. Further, compressed chromosome length and problem size are varied to see their effect in the performance. The experimental results show that our proposed algorithm outperforms the original MIMIC.
  • Keywords
    bioinformatics; biological techniques; cellular biophysics; data compression; genetics; molecular biophysics; molecular configurations; pattern clustering; LZW compressed chromosome encoding; LZW encoding; LZWMIMIC algorithm; Lempel-Ziv-Welch algorithm; gene position relationship; mutual information maximizing input clustering; Arrays; Biological cells; Dictionaries; Evolutionary computation; Genetic algorithms; MIMICs; Optimization; EDA; LZW; MIMIC;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
  • Conference_Location
    Shanghai
  • Print_ISBN
    978-1-4244-9351-7
  • Type

    conf

  • DOI
    10.1109/BMEI.2011.6098783
  • Filename
    6098783