DocumentCode
2592417
Title
LZW mutual-information-maximizing input clustering algorithm
Author
Watchanupaporn, Orawan ; Suwannik, Worasait
Author_Institution
Dept. of Comput. Sci., Kasetsart Univ., Bangkok, Thailand
Volume
4
fYear
2011
fDate
15-17 Oct. 2011
Firstpage
2273
Lastpage
2276
Abstract
This paper proposes a new evolutionary algorithm called LZWMIMIC. The proposed algorithm combines the LZW compressed chromosome encoding and Mutual-Information-Maximizing Input Clustering (MIMIC) algorithm. The advantage of LZW encoding is that it reduces the search space thus speeds up the evolutionary search. The advantage of MIMIC is that it can solve complex problem by finding a relationship between gene positions. The performance of the original MIMIC and LZWMIMIC are compared on standard benchmark problems. Further, compressed chromosome length and problem size are varied to see their effect in the performance. The experimental results show that our proposed algorithm outperforms the original MIMIC.
Keywords
bioinformatics; biological techniques; cellular biophysics; data compression; genetics; molecular biophysics; molecular configurations; pattern clustering; LZW compressed chromosome encoding; LZW encoding; LZWMIMIC algorithm; Lempel-Ziv-Welch algorithm; gene position relationship; mutual information maximizing input clustering; Arrays; Biological cells; Dictionaries; Evolutionary computation; Genetic algorithms; MIMICs; Optimization; EDA; LZW; MIMIC;
fLanguage
English
Publisher
ieee
Conference_Titel
Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
Conference_Location
Shanghai
Print_ISBN
978-1-4244-9351-7
Type
conf
DOI
10.1109/BMEI.2011.6098783
Filename
6098783
Link To Document