DocumentCode
2682209
Title
Bolstered error estimator with feature selection
Author
Sima, Chao ; Vu, Thang ; Braga-Neto, Ulisses M. ; Dougherty, Edward R.
Author_Institution
Comput. Biol. Div., Translational Genomics Res. Inst., Phoenix, AZ, USA
fYear
2009
fDate
17-21 May 2009
Firstpage
1
Lastpage
2
Abstract
Classification and error estimation are fundamental problems in genomic applications which are typically characterized by large numbers of variables and small numbers of samples. A previously proposed bolstered error estimator was found to work well in the small-sample settings with modest numbers of features not requiring feature selection. In this simulation study, we have improved the method for estimation of the bolstering kernels, which leads to an improved bolstered error estimator that has significantly reduced root mean square error compared to widely-accepted cross-validation error estimator, and performed well over a range of models and model complexities.
Keywords
biology computing; genomics; bolstered error estimator; bolstering kernels; feature selection; genomics; Bioinformatics; Chaos; Computational biology; Computer errors; Covariance matrix; Error analysis; Error correction; Genomics; Kernel; Root mean square;
fLanguage
English
Publisher
ieee
Conference_Titel
Genomic Signal Processing and Statistics, 2009. GENSIPS 2009. IEEE International Workshop on
Conference_Location
Minneapolis, MN
Print_ISBN
978-1-4244-4761-9
Electronic_ISBN
978-1-4244-4762-6
Type
conf
DOI
10.1109/GENSIPS.2009.5174343
Filename
5174343
Link To Document