The foundational model of anatomy: a template for the symbolic representation of multi-scale physiological functions

Author

Cook, D.L. ; Mejino, J.L.V. ; Rosse, C.

Author_Institution

Dept. of Physiol. & Biophys., Washington Univ., Seattle, WA, USA

Volume

2

fYear

2004

fDate

1-5 Sept. 2004

Firstpage

5415

Lastpage

5418

Abstract

We describe the foundational model of anatomy (FMA), reference ontology for the discipline of human anatomy. Using the semantic structure of the FMA as knowledge representation template, we propose a physiology reference ontology (PRO) as a corresponding ontology for "functional bioinformatics". We envision the PRO as a source vocabulary for building symbolic representations of human physiological states and actions that may ultimately be extensible to other species. We describe the evolving architecture of the PRO, in terms of simple examples based on the anatomical concepts encoded in the FMA.

Keywords

ontologies (artificial intelligence); physiological models; semantic networks; foundational model of anatomy; functional bioinformatics; human anatomy; knowledge representation; multiscale physiological functions; physiology reference ontology; semantic structure; Anatomical structure; Anatomy; Biological system modeling; Data structures; Humans; Ontologies; Organisms; Pancreas; Physiology; Taxonomy; Anatomy; Physiology Reference Ontology; Protégé-2000; informatics; ontology; physiology;

fLanguage

English

Publisher

ieee

Conference_Titel

Engineering in Medicine and Biology Society, 2004. IEMBS '04. 26th Annual International Conference of the IEEE

Conference_Location

San Francisco, CA

Print_ISBN

0-7803-8439-3

Type

conf

DOI

10.1109/IEMBS.2004.1404513

Filename

1404513