DocumentCode
2876056
Title
Fourier-based filtering approach for identification of protein- coding regions in DNA sequences
Author
Das, Bihter ; Turkoglu, Ibrahim
Author_Institution
Yazilim Muhendisligi Bolumu, Firat Univ., Elazığ, Turkey
fYear
2015
fDate
16-19 May 2015
Firstpage
2529
Lastpage
2532
Abstract
Identification of protein-coding regions is very difficult in genomic research. This coding regions have 3-base periodicity are named as exon. The aim of this paper is to estimate position of exon in the DNA sequence used filter approach based Fourier. For this purpose, DNA sequences of M8694 gene in human species are transformed to numeric sequences by EIIP mapping technique. Time frequency domain of numeric DNA sequences is obtained by Fourier method and 3-period signal is filtered using antinotch filter. Exon regions of filtered signal are defined successfully according to the specified percentile threshold.
Keywords
DNA; Fourier transforms; biology computing; filtering theory; medical signal processing; DNA sequence used filter approach; EIIP mapping technique; Fourier-based filtering approach; exon regions; genomic research; protein-coding regions identification; Bioinformatics; DNA; Encoding; Filtering; Genomics; Protein engineering; Proteins; Antinotch filter; DNA sequence; Exon; Fourier transform;
fLanguage
English
Publisher
ieee
Conference_Titel
Signal Processing and Communications Applications Conference (SIU), 2015 23th
Conference_Location
Malatya
Type
conf
DOI
10.1109/SIU.2015.7130399
Filename
7130399
Link To Document