• DocumentCode
    2975027
  • Title

    A signal boosting technique for gene prediction

  • Author

    Gunawan, Teddy Surya ; Ambikairajah, Eliathamby ; Epps, Julien

  • Author_Institution
    Univ. of New South Wales Sydney, Sydney
  • fYear
    2007
  • fDate
    10-13 Dec. 2007
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    This paper presents the signal boosting technique for gene and exon identification of a DNA sequence. Newly proposed signal boosting technique is used to enhance the coding region and improve the likelihood of correctly identifying the coding region. This new method is compared with other genomic signal processing techniques, such as DFT, IIR anti-notch filter, and multistage filters. Results show that the ratio of coding to non-coding energy was enhanced by almost twice. Furthermore, the proposed method outperforms other methods in terms of sensitivity, specificity, and prediction rate, when testing with 78 sequences from HMR195 database.
  • Keywords
    DNA; biology computing; encoding; genetics; prediction theory; signal processing; DNA sequence; HMR195 database; coding region; exon identification; gene prediction; signal boosting technique; Bioinformatics; Boosting; DNA; Databases; Digital filters; Digital signal processing; Genomics; IIR filters; Sequences; Signal processing; DNA; digital filter; gene prediction; genomic signal processing; signal boosting;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Information, Communications & Signal Processing, 2007 6th International Conference on
  • Conference_Location
    Singapore
  • Print_ISBN
    978-1-4244-0982-2
  • Electronic_ISBN
    978-1-4244-0983-9
  • Type

    conf

  • DOI
    10.1109/ICICS.2007.4449755
  • Filename
    4449755