DocumentCode
3001562
Title
Parallel processing of hybrid exact string matching algorithm
Author
Abdulrazzaq, Atheer Akram ; Abdul Rashid, Nur´Aini ; Alezzi, Ayad Hussain Abdulkader
Author_Institution
Sch. of Comput. Sci., Univ. Sains Malaysia (USM), Minden, Malaysia
fYear
2013
fDate
Nov. 29 2013-Dec. 1 2013
Firstpage
203
Lastpage
209
Abstract
The advancement of computer hardware has opened up new challenges to algorithms experts. One of the challenges is designing new algorithm that exploit the parallel nature of the new architecture of current computer hardware. In this study, we redesign the hybrid exact string matching algorithm named AKRAM on parallel platform with the goal of speeding up the algorithm. The parallel of this algorithm showed optimal results, in parallel time, speed up, efficiency and percentage of performance gain when compared to the sequential version. The result demonstrated that the performance of both parallelized and sequential of AKRAM algorithm was influenced by type of data. The DNA sequence showed the highest performance than other data types after parallelization.
Keywords
DNA; bioinformatics; multiprocessing systems; parallel algorithms; parallel architectures; parallel processing; string matching; AKRAM; DNA sequence; computer hardware; hybrid exact string matching algorithm; parallel algorithm; parallel architecture; parallel platform; parallel processing; parallel time; performance gain; Algorithm design and analysis; Conferences; Control systems; DNA; Databases; Performance gain; Program processors; analysis of performance Message Passing Interface (MPI); hybrid algorithm; parallelization;
fLanguage
English
Publisher
ieee
Conference_Titel
Control System, Computing and Engineering (ICCSCE), 2013 IEEE International Conference on
Conference_Location
Mindeb
Print_ISBN
978-1-4799-1506-4
Type
conf
DOI
10.1109/ICCSCE.2013.6719959
Filename
6719959
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