DocumentCode
3048173
Title
Phylogenetic Analysis with a New Distance Measure
Author
Li-Ting Zhang ; Wei-Hong Guan
Author_Institution
Sch. of Inf. Technol., Southern Yangtze Univ., Wuxi
fYear
2007
fDate
6-8 July 2007
Firstpage
306
Lastpage
309
Abstract
A new distance measure called quadratic divergence distance is used to analyze characteristics between two genome sequences, based on the frequency matrices extracted from Chaos Game Representation (CGR). We generate phylogenetic trees with this distance through Hierarchical Clustering for several complete mitochondrial sequences. And compared with tree generated by CLUSTALW, our program expresses some particular features, which is of significant value of bioinformatics.
Keywords
biology computing; genetics; bioinformatics; chaos game representation; genome sequences; hierarchical clustering; mitochondrial sequences; phylogenetic analysis; phylogenetic trees; quadratic divergence distance; Bioinformatics; Chaos; DNA; Data mining; Frequency measurement; Genomics; Information analysis; Organisms; Phylogeny; Sequences;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedical Engineering, 2007. ICBBE 2007. The 1st International Conference on
Conference_Location
Wuhan
Print_ISBN
1-4244-1120-3
Type
conf
DOI
10.1109/ICBBE.2007.82
Filename
4272566
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