Modification of the RRM model using wavelets transform and ionisation constant to predict protein active sites

Author

Cosic, Irena ; Fang, Qiang ; Pirogova, Elena

Author_Institution

Dept. of Electr. & Comput. Syst. Eng., Monash Univ., Clayton, Vic., Australia

Volume

2

fYear

1999

fDate

36434

Abstract

The resonant recognition model (RRM) which utilises the Fourier transform on the numerical representation of protein sequences obtained by representing each amino acid by an electron-ion interaction potential, has been shown useful in predicting the key amino acids for a protein sequence. Here, the authors discuss the modification of this model using ionisation constant to represent a protein sequence as a numerical series and continuous wavelet transform to predict active regions in the protein

Keywords

Fourier transforms; ionisation; molecular biophysics; physiological models; proteins; wavelet transforms; RRM model modification; electron-ion interaction potential; ionisation constant; key amino acids prediction; numerical representation; protein active sites prediction; protein sequences; Amino acids; Continuous wavelet transforms; Fourier transforms; Ionization; Mice; Predictive models; Protein engineering; Protein sequence; Resonance; Wavelet transforms;

fLanguage

English

Publisher

ieee

Conference_Titel

[Engineering in Medicine and Biology, 1999. 21st Annual Conference and the 1999 Annual Fall Meetring of the Biomedical Engineering Society] BMES/EMBS Conference, 1999. Proceedings of the First Joint

Conference_Location

Atlanta, GA

ISSN

1094-687X

Print_ISBN

0-7803-5674-8

Type

conf

DOI

10.1109/IEMBS.1999.804381

Filename

804381