DocumentCode
3406332
Title
Unbiased τ-leap methods for stochastic simulation of biochemical systems
Author
Xu, Zhouyi ; Cai, Xiaodong
Author_Institution
ECE Dept., Univ. of Miami, Coral Gables, FL
fYear
2008
fDate
March 31 2008-April 4 2008
Firstpage
657
Lastpage
660
Abstract
Stochastic simulation of biological systems has received much attention recently. A very promising stochastic simulation method is the tau-leap method, which can significantly accelerate simulation with controllable accuracy. However, all current -leap methods produce biased results, which can cause large simulation errors. In this paper, we analyze the expected number of reactions occurring during each leap. Relying on the analytical results, we develop an unbiased Poisson tau-leap method and an unbiased binomial tau-leap method. Simulations demonstrate that our new unbiased tau-leap method can significantly improve simulation accuracy without sacrificing simulation speed.
Keywords
biochemistry; molecular biophysics; stochastic processes; Poisson method; binomial method; biochemical systems; current-leap methods; stochastic simulation; unbiased tau-leap methods; Acceleration; Biological system modeling; Biological systems; Chemical analysis; Computational modeling; Discrete event simulation; Random variables; Stochastic processes; Stochastic systems; Tin; Biological system modeling; Cell signalling pathway; Parameter estimation; Stochastic simulation;
fLanguage
English
Publisher
ieee
Conference_Titel
Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on
Conference_Location
Las Vegas, NV
ISSN
1520-6149
Print_ISBN
978-1-4244-1483-3
Electronic_ISBN
1520-6149
Type
conf
DOI
10.1109/ICASSP.2008.4517695
Filename
4517695
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