• DocumentCode
    3406332
  • Title

    Unbiased τ-leap methods for stochastic simulation of biochemical systems

  • Author

    Xu, Zhouyi ; Cai, Xiaodong

  • Author_Institution
    ECE Dept., Univ. of Miami, Coral Gables, FL
  • fYear
    2008
  • fDate
    March 31 2008-April 4 2008
  • Firstpage
    657
  • Lastpage
    660
  • Abstract
    Stochastic simulation of biological systems has received much attention recently. A very promising stochastic simulation method is the tau-leap method, which can significantly accelerate simulation with controllable accuracy. However, all current -leap methods produce biased results, which can cause large simulation errors. In this paper, we analyze the expected number of reactions occurring during each leap. Relying on the analytical results, we develop an unbiased Poisson tau-leap method and an unbiased binomial tau-leap method. Simulations demonstrate that our new unbiased tau-leap method can significantly improve simulation accuracy without sacrificing simulation speed.
  • Keywords
    biochemistry; molecular biophysics; stochastic processes; Poisson method; binomial method; biochemical systems; current-leap methods; stochastic simulation; unbiased tau-leap methods; Acceleration; Biological system modeling; Biological systems; Chemical analysis; Computational modeling; Discrete event simulation; Random variables; Stochastic processes; Stochastic systems; Tin; Biological system modeling; Cell signalling pathway; Parameter estimation; Stochastic simulation;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on
  • Conference_Location
    Las Vegas, NV
  • ISSN
    1520-6149
  • Print_ISBN
    978-1-4244-1483-3
  • Electronic_ISBN
    1520-6149
  • Type

    conf

  • DOI
    10.1109/ICASSP.2008.4517695
  • Filename
    4517695