DocumentCode
3612129
Title
Learning Running-time Prediction Models for Gene-Expression Analysis Workflows
Author
Monge, David A. ; Holec, Matej ; Zelezny, Filip ; Garcia Garino, Carlos
Author_Institution
ITIC Res. Inst., Nat. Univ. of Cuyo, Cuyo, Argentina
Volume
13
Issue
9
fYear
2015
Firstpage
3088
Lastpage
3095
Abstract
One of the central issues for the efficient management of Scientific workflow applications is the prediction of tasks performance. This paper proposes a novel approach for constructing performance models for tasks in data-intensive scientific workflows in an autonomous way. Ensemble Machine Learning techniques are used to produce robust combined models with high predictive accuracy. Information derived from workflow systems and the characteristics and provenance of the data are exploited to guarantee the accuracy of the models. A gene-expression analysis workflow application was used as case study over homogeneous and heterogeneous computing environments. Experimental results evidence noticeable improvements while using ensemble models in comparison with single/standalone prediction models. Ensemble learning techniques made it possible to reduce the prediction error with respect to the strategies of a single-model with values ranging from 14.47 percent to 28.36 percent for the homogeneous case, and from 8.34 percent to 17.18 percent for the heterogeneous case.
Keywords
bioinformatics; genetics; learning (artificial intelligence); bioinformatics; data-intensive scientific workflow; ensemble machine learning technique; gene-expression analysis workflow application; heterogeneous computing environment; running-time prediction model; scientific workflow application; Adaptation models; Analytical models; Benchmark testing; Biological system modeling; Computational modeling; Predictive models; Robustness; Bioinformatics; Distributed Computing; Ensemble Learning; Performance Prediction; Workflows;
fLanguage
English
Journal_Title
Latin America Transactions, IEEE (Revista IEEE America Latina)
Publisher
ieee
ISSN
1548-0992
Type
jour
DOI
10.1109/TLA.2015.7350063
Filename
7350063
Link To Document