DocumentCode
419570
Title
Feature selection and gene clustering from gene expression data
Author
Mitra, Pabitra ; Majumder, Dwijesh Dutta
Author_Institution
Machine Intelligence Unit, Indian Stat. Inst., Kolkata, India
Volume
2
fYear
2004
fDate
23-26 Aug. 2004
Firstpage
343
Abstract
In This work we describe an algorithm for feature selection and gene clustering from high dimensional gene expression data. The method is based on measuring similarity between features/genes whereby redundancy therein is removed. This does not need any search and therefore is fast. A novel feature similarity measure, called maximum information compression index, is used. The feature selection algorithm also obtains gene clusters in a multiscale fashion. The superiority of the algorithm, in terms of speed and performance, is established on a real life molecular cancer classification dataset.
Keywords
biology computing; feature extraction; genetics; optimisation; pattern clustering; feature selection; feature similarity measure; gene clustering; gene expression data; maximum information compression index; molecular cancer classification dataset; Cancer; Clustering algorithms; Data mining; Entropy; Gene expression; Inference algorithms; Machine intelligence; Partitioning algorithms; Random variables; Reactive power;
fLanguage
English
Publisher
ieee
Conference_Titel
Pattern Recognition, 2004. ICPR 2004. Proceedings of the 17th International Conference on
ISSN
1051-4651
Print_ISBN
0-7695-2128-2
Type
conf
DOI
10.1109/ICPR.2004.1334213
Filename
1334213
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