• DocumentCode
    54721
  • Title

    Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines

  • Author

    Mazza, Tommaso ; Fusilli, Caterina ; Saracino, Chiara ; Mazzoccoli, Gianluigi ; Tavano, Francesca ; Vinciguerra, Manlio ; Pazienza, Valerio

  • Author_Institution
    Bioinf. Unit, IRCCS Casa Sollievo della Sofferenza-Mendel, Rome, Italy
  • Volume
    12
  • Issue
    3
  • fYear
    2015
  • fDate
    May-June 1 2015
  • Firstpage
    667
  • Lastpage
    678
  • Abstract
    Pancreatic cancer is a highly aggressive and chemotherapy-resistant malignant neoplasm. In basal condition, it is characterized by elevated autophagy activity, which is required for tumor growth and that correlates with treatment failure. We analyzed the expression of autophagy related genes in different pancreatic cancer cell lines. A correlation-based network analysis evidenced the sociality and topological roles of the autophagy-related genes after serum starvation. Structural and functional tests identified a core set of autophagy related genes, suggesting different scenarios of autophagic responses to starvation, which may be responsible for the clinical variations associated with pancreatic cancer pathogenesis.
  • Keywords
    cancer; cellular biophysics; genetics; tumours; autophagic responses; autophagy-related genes; chemotherapy-resistant malignant neoplasm; correlation-based network analysis; elevated autophagy activity; functional tests; homeostasis; pancreatic cancer cell lines; pancreatic cancer pathogenesis; serum starvation; structural tests; tumor growth; Bioinformatics; Cancer; Computational biology; Correlation; IEEE transactions; Modulation; Tumors; Autophagy; Network topology; Pancreatic cancer; Starvation; network topology; pancreatic cancer; starvation;
  • fLanguage
    English
  • Journal_Title
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on
  • Publisher
    ieee
  • ISSN
    1545-5963
  • Type

    jour

  • DOI
    10.1109/TCBB.2014.2371824
  • Filename
    6965612