DocumentCode
726945
Title
An accurate clustering algorithm for fast protein-profiling using SCICA on MALDI-TOF
Author
Acharyya, Amit ; Neehar, Mavuduru ; Naik, Ganesh R.
Author_Institution
Dept. of Electr. Eng., Indian Inst. of Technol., Hyderabad, Hyderabad, India
fYear
2015
fDate
24-27 May 2015
Firstpage
69
Lastpage
72
Abstract
In this paper we propose an accurate clustering algorithm as the necessary step of the Single Channel Independent Component Analysis (SCICA) in the context of the fast extraction of protein profiles from the mass spectra (MALDI-TOF) data. In general K-means clustering is employed for clustering of the basis vectors. However given its iterative and statistical nature, convergence to the same clusters for the same data sets is not always guaranteed making it inaccurate, especially in protein-profiling where reliability of the bio-marker based disease detection and diagnosis depend immensely on the reliability of the clustering algorithm. Furthermore the proposed algorithm does not involve any arithmetic computations helping expedite the entire SCICA process.
Keywords
MALDI mass spectra; bioinformatics; independent component analysis; pattern clustering; proteins; time of flight mass spectra; MALDI-TOF; SCICA; basis vectors clustering; bio-marker; disease detection; disease diagnosis; k-means clustering algorithm; mass spectra; protein profile extraction; protein-profiling; single channel independent component analysis; Algorithm design and analysis; Clustering algorithms; Data mining; Independent component analysis; Proteins; Reliability; Signal processing algorithms; Clustering; K-Means; Protein profiling; SCICA;
fLanguage
English
Publisher
ieee
Conference_Titel
Circuits and Systems (ISCAS), 2015 IEEE International Symposium on
Conference_Location
Lisbon
Type
conf
DOI
10.1109/ISCAS.2015.7168572
Filename
7168572
Link To Document