• DocumentCode
    726945
  • Title

    An accurate clustering algorithm for fast protein-profiling using SCICA on MALDI-TOF

  • Author

    Acharyya, Amit ; Neehar, Mavuduru ; Naik, Ganesh R.

  • Author_Institution
    Dept. of Electr. Eng., Indian Inst. of Technol., Hyderabad, Hyderabad, India
  • fYear
    2015
  • fDate
    24-27 May 2015
  • Firstpage
    69
  • Lastpage
    72
  • Abstract
    In this paper we propose an accurate clustering algorithm as the necessary step of the Single Channel Independent Component Analysis (SCICA) in the context of the fast extraction of protein profiles from the mass spectra (MALDI-TOF) data. In general K-means clustering is employed for clustering of the basis vectors. However given its iterative and statistical nature, convergence to the same clusters for the same data sets is not always guaranteed making it inaccurate, especially in protein-profiling where reliability of the bio-marker based disease detection and diagnosis depend immensely on the reliability of the clustering algorithm. Furthermore the proposed algorithm does not involve any arithmetic computations helping expedite the entire SCICA process.
  • Keywords
    MALDI mass spectra; bioinformatics; independent component analysis; pattern clustering; proteins; time of flight mass spectra; MALDI-TOF; SCICA; basis vectors clustering; bio-marker; disease detection; disease diagnosis; k-means clustering algorithm; mass spectra; protein profile extraction; protein-profiling; single channel independent component analysis; Algorithm design and analysis; Clustering algorithms; Data mining; Independent component analysis; Proteins; Reliability; Signal processing algorithms; Clustering; K-Means; Protein profiling; SCICA;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Circuits and Systems (ISCAS), 2015 IEEE International Symposium on
  • Conference_Location
    Lisbon
  • Type

    conf

  • DOI
    10.1109/ISCAS.2015.7168572
  • Filename
    7168572