An aqua-adenine H-bonding interaction controlling the formation of the rare Zn(II)–N9(adenine) bond in crystal structure of diaqua(adenine)(iminodiacetato)zinc(II)

A novel mixed-ligand zinc(II) complex with iminodiacetato(2-) (IDA) and adenine (AdeH) ligands has been obtained. Its crystal consists of octahedral molecules [Zn(IDA)(AdeH)(H2O)2] where the selective Zn–N9(AdeH) bond, involving the most basic N(AdeH) donor atom, occupies the trans position versus the Zn–N(IDA) bond. The Zn(II)–N9(AdeH) binding mode seems to be rare enough in comparison to those previously reported for Zn(II) and AdeH or a variety of related ligands. The chelate-nucleobase recognition process is further accomplished by an O–H(aqua)⋯N3(adenine) inter-ligand H-bonding interaction, without any intra-molecular IDA–nucleobase interaction. This finding is attributed to the polarizing effect of Zn(II) on the aqua ligand and the possibilities of AdeH acting as N-donor for the metal(II) atom and H-acceptor for an intra-molecular inter-ligand H-bonding interaction. There are no aromatic π,π-stacking contributions in the 3D H-bonded network, where all polar N–H (IDA or AdeH) and O–H (aqua) bonds are involved as donors in H-bonding interactions, which include AdeH:AdeH and IDA:AdeH pairing by double inter-molecular bridges.