• Title of article

    Path sampling with stochastic dynamics: Some new algorithms

  • Author/Authors

    Stoltz، نويسنده , , Gabriel، نويسنده ,

  • Issue Information
    روزنامه با شماره پیاپی سال 2007
  • Pages
    18
  • From page
    491
  • To page
    508
  • Abstract
    We propose here some new sampling algorithms for path sampling in the case when stochastic dynamics are used. In particular, we present a new proposal function for equilibrium sampling of paths with a Monte–Carlo dynamics (the so-called “brownian tube” proposal). This proposal is based on the continuity of the dynamics with respect to the random forcing, and generalizes all previous approaches when stochastic dynamics are used. The efficiency of this proposal is demonstrated using some measure of decorrelation in path space. We also discuss a switching strategy that allows to transform ensemble of paths at a finite rate while remaining at equilibrium, in contrast with the usual Jarzynski like switching. This switching is very interesting to sample constrained paths starting from unconstrained paths, or to perform simulated annealing in a rigorous way.
  • Keywords
    Path sampling , Sampling algorithms , Molecular dynamics , Free energy computations
  • Journal title
    Journal of Computational Physics
  • Serial Year
    2007
  • Journal title
    Journal of Computational Physics
  • Record number

    1479908