Title of article :
On the estimation and correction of discretization error in molecular dynamics averages
Author/Authors :
Arizumi، Yasunori نويسنده , , Nana and Bond، نويسنده , , Stephen D.، نويسنده ,
Issue Information :
روزنامه با شماره پیاپی سال 2012
Pages :
16
From page :
1938
To page :
1953
Abstract :
The computation of statistical averages is one of the most important applications of molecular dynamics simulation, allowing for the estimation of macroscopic physical quantities through averages of observables sampled along microscopic trajectories. In this article, we investigate the impact of discretization error on the accuracy of molecular dynamics averages. Given a Hamiltonian system and a symplectic integrator, new weighting methods are derived to better approximate averages of certain observables, without changing the system or integrator. These new methods are shown to reduce discretization error and enhance the order of accuracy without high-overhead calculations.
Keywords :
symplectic integrators , Nosé–Poincaré Hamiltonian , Ensemble averages , Statistical mechanics , Molecular dynamics
Journal title :
Applied Numerical Mathematics
Serial Year :
2012
Journal title :
Applied Numerical Mathematics
Record number :
1529693
Link To Document :
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