• Title of article

    Data compression and genomes: A two-dimensional life domain map

  • Author/Authors

    Menconi، نويسنده , , Giulia and Benci، نويسنده , , Vieri and Buiatti، نويسنده , , Marcello، نويسنده ,

  • Issue Information
    روزنامه با شماره پیاپی سال 2008
  • Pages
    8
  • From page
    281
  • To page
    288
  • Abstract
    We define the complexity of DNA sequences as the information content per nucleotide, calculated by means of some Lempel–Ziv data compression algorithm. It is possible to use the statistics of the complexity values of the functional regions of different complete genomes to distinguish among genomes of different domains of life (Archaea, Bacteria and Eukarya). We shall focus on the distribution function of the complexity of non-coding regions. We show that the three domains may be plotted in separate regions within the two-dimensional space where the axes are the skewness coefficient and the curtosis coefficient of the aforementioned distribution. Preliminary results on 15 genomes are introduced.
  • Keywords
    Statistical analysis , Lempel–Ziv compression , Algorithms , DNA Sequences , Evolutionary dynamics
  • Journal title
    Journal of Theoretical Biology
  • Serial Year
    2008
  • Journal title
    Journal of Theoretical Biology
  • Record number

    1539315