Title of article :
Equilibrium exchange enhances the convergence rate of umbrella sampling
Author/Authors :
Neale، نويسنده , , Chris and Rodinger، نويسنده , , Tomas and Pomès، نويسنده , , Régis، نويسنده ,
Issue Information :
روزنامه با شماره پیاپی سال 2008
Abstract :
Umbrella sampling, a technique for sampling energetically unfavorable states by computer simulation, is subject to systematic sampling errors arising from quasi-nonergodicity. In order to address this problem, we compare free energy profiles generated along the backbone dihedral angles φ and ψ of alanine dipeptide in water using umbrella sampling successively with and without the provision of equilibrium exchange between umbrellas. The results show that the addition of equilibrium exchange to umbrella sampling alleviates these errors by restoring the utilization of transition paths that leave and reenter the specified sampling region.
Journal title :
Chemical Physics Letters
Journal title :
Chemical Physics Letters