Title of article :
Building the taxonomic profile of the Riniaie Marwah hot spring of Kishtwar in Jammu and Kashmir: the first high-throughput sequencing-based metagenome study
Author/Authors :
Wani ، Atif Khurshid Department of Biotechnology - School of Bioengineering and Biosciences - Lovely Professional University , Ahmad ، Suhail Department of Remote Sensing and GIS - University of Jammu , Américo-Pinheiro ، Juliana Heloisa Pinê Department of Forest Science, Soils and Environment - School of Agronomic Sciences - São Paulo State University (UNESP) , Tizro ، Nazli Department of the Environment - College of Natural Resources and Environment - Islamic Azad University, Science and Research Branch , Singh ، Reena Department of Biotechnology - School of Bioengineering and Biosciences - Lovely Professional University
From page :
723
To page :
733
Abstract :
Background and Objectives: Rinaie Marwah hot spring Kishtwar (RMHSK) is one of the geothermal springs located at 33°51′51′′N 75°32′07′′E with an elevation of 2134 meters above sea level in Jammu and Kashmir, India. We aimed to study the microbial diversity of this geothermal spring using metagenomics. Materials and Methods: In the present study, physiochemical parameters including temperature (65-75°C), pH (6. 9-8. 8), hardness (250 ppm), and mineral content was measured along with the microbial diversity using Illumina MiSeq metage- nome-based 16s amplicon sequencing (V3-V4). The sequence reads were classified taxonomically into 31 phyla, 71 classes, 152 orders, 256 families, 410 genus, and 665 species. QIIME 2 (Quantitative Insights into Microbial Ecology), an extensible, powerful, and decentralized analytical tool, was used for taxonomic analysis. Results: Bacteroidota (32. 57%) was the dominant phylum, Bacteroidia (32. 51%) the dominant class, Bacteroidales (16.6%) the dominant order, and Lentimicrobiaceae (14. 23%) was the dominant family per the abundance analysis. Shannon (2. 28) and Chao 1 (87. 0) diversity indices support the existence of higher microbial diversity in RMHSK (50717 OTUs). Conclusion: The microbial diversity of RMHSK is reported for the first time through a metagenomic study. Identification of microorganisms with characteristics that are relevant to industries.
Keywords :
Hot spring , Metagenome , Taxonomy , High throughput DNA sequencing , Illumina sequencing
Journal title :
IJM Iranian Journal of Microbiology
Journal title :
IJM Iranian Journal of Microbiology
Record number :
2757451
Link To Document :
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