Title of article :
Declarative modeling of a neurulation-like process
Author/Authors :
Antoine Spicher، نويسنده , , Olivier Michel، نويسنده ,
Issue Information :
روزنامه با شماره پیاپی سال 2007
Pages :
8
From page :
281
To page :
288
Abstract :
is an experimental programming language dedicated to the modeling and the simulation of a special kind of discrete dy- namical systems. Dynamical systems with a dynamical structure (or (DS)2) arise when the state space is not fixed a priori but is jointly computed with the current state during the simulation. In this case the evolution function is often given through local rules that drive the interaction between some system components. offers a new kind of data structure, topological collections, to describe the state of a dynamical system, and a new kind of control structure, transformations, to express local and discrete evolution laws. These two notions permit an easy specification of (DS)2. We propose in this paper a presentation of the language and its main contributions. We show that various topological collections can be unified using concepts developed in combinatorial algebraic topology: cellular complexes and topological chains. Then we apply the notions brought by to model and simulate the first step towards the simulation of the neurulation process in developmental biology where a sheet of cells evolves to a neural tube. It is a direct description of the modification of the topology of an arbitrary structure expressed in terms of local discrete evolution laws.
Keywords :
Rewriting , Dynamical systems with a dynamical structure , Combinatorial algebraic topology , transformation , Computational models for developmental biology , Topological collection
Journal title :
BioSystems
Serial Year :
2007
Journal title :
BioSystems
Record number :
497784
Link To Document :
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