Bioinformatics Analysis of Promoters Cis-elements and study on Genes Co-expression of Oxidative Defense Pathway inOryza sativa L. Plant

ABSTRACT: Antioxidants are materials that inhibit making free radicals in cells and they protect cells from destructive effects of them. It is produced “ROS” components in cells because of stresses types. ROSS or “Reaction Oxygen Species” (free radicles) act as mutant producer materials in reactions and they cause fats destruction and deactivation of proteins or creating of tribulation in their actions. ROSs are produced in organelles of chloroplasts, mitochondria and peroxisomes in different metabolic pathways and they are exterminated by antioxidant defense mechanisms. Many studied show antioxidant defense mechanisms for cells protection against to ROSS. In this study, we survey promoter cis-elements for oxidative defense pathway genes in Oryza sativa L. plantand explain genes co-expression relationships and their grouping. There is maximum of correlation and co-expression for genes: P0036E06.27-2, P0680A05.38,Os12g0154700, P0541H01.37-1, P0036E06.27-1 and Os08g0549100with other genes in oxidative defense pathway of Oryza sativa L. plant and it is introduced 5UTR Py - rich stretch, ABRE, Box – 4, G – Box, MBS and skn - 1 – motifas the most important Cis-elements with high frequency. In this study, we give present a designed gene network baste on genes output results. These consequences can be used for various purposes example, genes transformation by genetics and plant breeding researchers.