Title :
A Fast Parallel Solver for the Forward Problem in Electrical Impedance Tomography
Author :
Jehl, Markus ; Dedner, Andreas ; Betcke, Timo ; Aristovich, Kirill ; Klofkorn, Robert ; Holder, David
Author_Institution :
Dept. of Math., Univ. Coll. London, London, UK
Abstract :
Electrical impedance tomography (EIT) is a noninvasive imaging modality, where imperceptible currents are applied to the skin and the resulting surface voltages are measured. It has the potential to distinguish between ischaemic and haemorrhagic stroke with a portable and inexpensive device. The image reconstruction relies on an accurate forward model of the experimental setup. Because of the relatively small signal in stroke EIT, the finite-element modeling requires meshes of more than 10 million elements. To study the requirements in the forward modeling in EIT and also to reduce the time for experimental image acquisition, it is necessary to reduce the run time of the forward computation. We show the implementation of a parallel forward solver for EIT using the Dune-Fem C++ library and demonstrate its performance on many CPU´s of a computer cluster. For a typical EIT application a direct solver was significantly slower and not an alternative to iterative solvers with multigrid preconditioning. With this new solver, we can compute the forward solutions and the Jacobian matrix of a typical EIT application with 30 electrodes on a 15-million element mesh in less than 15 min. This makes it a valuable tool for simulation studies and EIT applications with high precision requirements. It is freely available for download.
Keywords :
C++ language; Jacobian matrices; bioelectric phenomena; biomedical electrodes; electric impedance imaging; image reconstruction; medical image processing; mesh generation; parallel processing; portable instruments; skin; software libraries; CPU; DUNE-FEM C++ library; Jacobian matrix; computer cluster; electrical impedance tomography; electrodes; fast parallel solver; finite-element modeling; forward computation; forward modeling; haemorrhagic stroke; image acquisition; image reconstruction; imperceptible currents; ischaemic stroke; noninvasive imaging modality; parallel forward solver; portable device; skin; stroke EIT; surface voltages; Assembly; Educational institutions; Electrodes; Impedance; Jacobian matrices; Libraries; Tomography; Electrical impedance tomography (EIT); finite-element solver; forward problem; parallel computing;
Journal_Title :
Biomedical Engineering, IEEE Transactions on
DOI :
10.1109/TBME.2014.2342280