Title :
Multicategory Classification Using An Extreme Learning Machine for Microarray Gene Expression Cancer Diagnosis
Author :
Zhang, Runxuan ; Huang, Guang-Bin ; Sundararajan, Narasimhan ; Saratchandran, P.
Author_Institution :
Inst. Pasteur, Paris
Abstract :
In this paper, the recently developed Extreme Learning Machine (ELM) is used for directing multicategory classification problems in the cancer diagnosis area. ELM avoids problems like local minima, improper learning rate and overfitting commonly faced by iterative learning methods and completes the training very fast. We have evaluated the multicategory classification performance of ELM on three benchmark microarray data sets for cancer diagnosis, namely, the GCM data set, the Lung data set, and the Lymphoma data set. The results indicate that ELM produces comparable or better classification accuracies with reduced training time and implementation complexity compared to artificial neural networks methods like conventional back-propagation ANN, Linder´s SANN, and Support Vector Machine methods like SVM-OVO and Ramaswamy´s SVM-OVA. ELM also achieves better accuracies for classification of individual categories.
Keywords :
cancer; genetics; learning systems; medical diagnostic computing; patient diagnosis; GCM data set; Linder SANN comparison; Ramaswamy SVM-OVA comparison; SVM-OVO comparison; artificial neural networks method comparison; back-propagation ANN comparison; extreme learning machine; lung; lymphoma; microarray gene expression cancer diagnosis; multicategory classification; support vector machine comparison; Artificial neural networks; Bioinformatics; Cancer; Gene expression; Iterative methods; Machine learning; Neural networks; Support vector machine classification; Support vector machines; Testing; Extreme learning machine; SVM; gene expression; microarray; multi-category classification; Algorithms; Artificial Intelligence; Diagnosis, Computer-Assisted; Gene Expression Profiling; Humans; Neoplasm Proteins; Neoplasms; Oligonucleotide Array Sequence Analysis; Pattern Recognition, Automated; Tumor Markers, Biological;
Journal_Title :
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
DOI :
10.1109/tcbb.2007.1012