• DocumentCode
    1105388
  • Title

    Discovering Novel Causal Patterns From Biomedical Natural-Language Texts Using Bayesian Nets

  • Author

    Atkinson, J. ; Rivas, A.

  • Author_Institution
    Dept. of Comput. Sci., Univ. de Concepcion, Concepcion
  • Volume
    12
  • Issue
    6
  • fYear
    2008
  • Firstpage
    714
  • Lastpage
    722
  • Abstract
    Most of the biomedicine text mining approaches do not deal with specific cause-effect patterns that may explain the discoveries. In order to fill this gap, this paper proposes an effective new model for text mining from biomedicine literature that helps to discover cause-effect hypotheses related to diseases, drugs, etc. The supervised approach combines Bayesian inference methods with natural-language processing techniques in order to generate simple and interesting patterns. The results of applying the model to biomedicine text databases and its comparison with other state-of-the-art methods are also discussed.
  • Keywords
    belief networks; data mining; inference mechanisms; medical information systems; natural language processing; text analysis; Bayesian inference methods; Bayesian nets; biomedical natural-language text mining; biomedicine literature; biomedicine text databases; causal pattern discovery; cause-effect patterns; natural-language processing techniques; supervised approach; Bayesian methods; Cancer; Councils; Data mining; Databases; Diseases; Drugs; Filtering; Medical treatment; Text mining; Bayesian Nets; Bayesian nets; Biomedicine; biomedicine; information extraction; knowledge discovery; text mining; Abstracting and Indexing as Topic; Algorithms; Artificial Intelligence; Bayes Theorem; Database Management Systems; Databases, Bibliographic; Databases, Factual; Information Storage and Retrieval; Natural Language Processing; Neural Networks (Computer); Periodicals as Topic;
  • fLanguage
    English
  • Journal_Title
    Information Technology in Biomedicine, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    1089-7771
  • Type

    jour

  • DOI
    10.1109/TITB.2008.920793
  • Filename
    4472920