• DocumentCode
    119517
  • Title

    Interactive visual support for metagenomic contig binning

  • Author

    Broeksema, Bertjan ; McGee, Fintan ; Calusinska, Magdalena ; Ghoniem, Mohammad

  • fYear
    2014
  • fDate
    25-31 Oct. 2014
  • Firstpage
    233
  • Lastpage
    234
  • Abstract
    Within metagenomics, "Contig Binning" is an important step in the process of reconstructing genomes of species in mixed cultures and environmental samples. We present an interactive visual environment which enables a biologist to statistically analyze the multiple dimensions of data that are typically used during binning, and integrate and compare the results of various binning methods. Our system features a web-based parallel coordinate visualization at the front end and a R server back end for analysis and semi-supervised clustering of contig data.
  • Keywords
    DNA; Internet; biology computing; data visualisation; genomics; molecular biophysics; pattern clustering; Web-based parallel coordinate visualization; binning method; contig data; environmental sample; interactive visual environment; interactive visual support; metagenomic contig binning; metagenomics; mixed cultures; multiple data dimension; reconstructing genomes; semisupervised clustering; server back end; Assembly; DNA; Data visualization; Genomics; Servers; Visualization;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Visual Analytics Science and Technology (VAST), 2014 IEEE Conference on
  • Conference_Location
    Paris
  • Type

    conf

  • DOI
    10.1109/VAST.2014.7042506
  • Filename
    7042506