DocumentCode
119517
Title
Interactive visual support for metagenomic contig binning
Author
Broeksema, Bertjan ; McGee, Fintan ; Calusinska, Magdalena ; Ghoniem, Mohammad
fYear
2014
fDate
25-31 Oct. 2014
Firstpage
233
Lastpage
234
Abstract
Within metagenomics, "Contig Binning" is an important step in the process of reconstructing genomes of species in mixed cultures and environmental samples. We present an interactive visual environment which enables a biologist to statistically analyze the multiple dimensions of data that are typically used during binning, and integrate and compare the results of various binning methods. Our system features a web-based parallel coordinate visualization at the front end and a R server back end for analysis and semi-supervised clustering of contig data.
Keywords
DNA; Internet; biology computing; data visualisation; genomics; molecular biophysics; pattern clustering; Web-based parallel coordinate visualization; binning method; contig data; environmental sample; interactive visual environment; interactive visual support; metagenomic contig binning; metagenomics; mixed cultures; multiple data dimension; reconstructing genomes; semisupervised clustering; server back end; Assembly; DNA; Data visualization; Genomics; Servers; Visualization;
fLanguage
English
Publisher
ieee
Conference_Titel
Visual Analytics Science and Technology (VAST), 2014 IEEE Conference on
Conference_Location
Paris
Type
conf
DOI
10.1109/VAST.2014.7042506
Filename
7042506
Link To Document