Title :
Modeling condensed-phase chemistry through molecular dynamics simulation
Author :
Iyengar, Srinivasan S. ; Burnham, Christian J. ; Petersen, Matt K. ; Voth, Gregory A.
Author_Institution :
Utah Univ., Salt Lake City, UT, USA
Abstract :
The challenges and problems involved in simulating condensed-phase dynamics, particularly for systems involving cleavage and formation of chemical bonds, are substantial. The authors describe two methods for simulating protonated liquid water and condensed-phase reaction dynamics, in which the commonly used multi-atom empirical force fields are inadequate.
Keywords :
bonds (chemical); chemistry computing; digital simulation; molecular dynamics method; reaction kinetics; chemical bond cleavage; chemical bond formation; condensed-phase chemistry modeling; condensed-phase dynamics; condensed-phase reaction dynamics; molecular dynamics simulation; protonated liquid water; Assembly; Biological system modeling; Biology computing; Chemicals; Chemistry; Computational modeling; Computer simulation; Large-scale systems; Nanobioscience; Protons;
Journal_Title :
Computing in Science & Engineering
DOI :
10.1109/MCISE.2003.1208639