Title :
Symmetry-constrained 3-D interpolation of viral X-ray crystallography data
Author :
Zheng, Yibin ; Doerschuk, Peter C. ; Johnson, John E.
Author_Institution :
Corp. R&D, Gen. Electr. Co., Schenectady, NY, USA
fDate :
1/1/2000 12:00:00 AM
Abstract :
A three-dimensional (3-D) interpolation problem that is important in viral X-ray crystallography is considered. The problem requires new methods because the function is known to have icosahedral symmetry, the data is corrupted by experimental errors and therefore lacks the symmetry, the problem is 3-D, the measurements are irregularly spaced, and the number of measurements is large (104). A least-squares approach is taken using two sets of basis functions: the functions implied by a minimum-energy bandlimited exact interpolation problem and a complete orthonormal set of bandlimited functions. A numerical example of the Cowpea Mosaic Virus is described
Keywords :
X-ray crystallography; biological techniques; interpolation; least squares approximations; medical signal processing; microorganisms; Cowpea Mosaic Virus; Gaussian Bayesian interpolation; basis functions; experimental errors; icosahedral symmetry; irregularly spaced measurements; least-squares approach; minimum-energy bandlimited exact interpolation; orthonormal bandlimited functions; symmetry-constrained 3D interpolation; viral X-ray crystallography data; Biology computing; Crystallization; Crystallography; Electrons; Fourier transforms; Interpolation; Lattices; Proteins; Research and development; Viruses (medical);
Journal_Title :
Signal Processing, IEEE Transactions on