DocumentCode
1302038
Title
Retroactivity Attenuation in Bio-Molecular Systems Based on Timescale Separation
Author
Jayanthi, Shridhar ; Del Vecchio, Domitilla
Author_Institution
Electr. Eng. & Comput. Sci. Dept., Univ. of Michigan, Ann Arbor, MI, USA
Volume
56
Issue
4
fYear
2011
fDate
4/1/2011 12:00:00 AM
Firstpage
748
Lastpage
761
Abstract
As with several engineering systems, bio-molecular systems display impedance-like effects at interconnections, called retroactivity. In this paper, we propose a mechanism that exploits the natural timescale separation present in bio-molecular systems to attenuate retroactivity. Retroactivity enters the dynamics of a bio-molecular system as a state dependent disturbance multiplied by gains that can be very large. By virtue of the system structure, retroactivity can be arbitrarily attenuated by internal system gains even when these are much smaller than the gains multiplying retroactivity terms. This result is obtained by employing a suitable change of coordinates and a nested application of the singular perturbation theorem on the finite time interval. As an application example, we show that two modules extracted from natural signal transduction pathways have a remarkable capability of attenuating retroactivity, which is certainly desirable in any (engineered or natural) signal transmission system.
Keywords
biochemistry; biomolecular electronics; molecular biophysics; perturbation theory; biomolecular system; finite time interval; natural signal transduction pathways; retroactivity attenuation; signal transmission system; singular perturbation theorem; timescale separation; Attenuation; Biological system modeling; Equations; Impedance; Modeling; Proteins; Systems biology; Bio-molecular system; retroactivity;
fLanguage
English
Journal_Title
Automatic Control, IEEE Transactions on
Publisher
ieee
ISSN
0018-9286
Type
jour
DOI
10.1109/TAC.2010.2069631
Filename
5555943
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