• DocumentCode
    1302038
  • Title

    Retroactivity Attenuation in Bio-Molecular Systems Based on Timescale Separation

  • Author

    Jayanthi, Shridhar ; Del Vecchio, Domitilla

  • Author_Institution
    Electr. Eng. & Comput. Sci. Dept., Univ. of Michigan, Ann Arbor, MI, USA
  • Volume
    56
  • Issue
    4
  • fYear
    2011
  • fDate
    4/1/2011 12:00:00 AM
  • Firstpage
    748
  • Lastpage
    761
  • Abstract
    As with several engineering systems, bio-molecular systems display impedance-like effects at interconnections, called retroactivity. In this paper, we propose a mechanism that exploits the natural timescale separation present in bio-molecular systems to attenuate retroactivity. Retroactivity enters the dynamics of a bio-molecular system as a state dependent disturbance multiplied by gains that can be very large. By virtue of the system structure, retroactivity can be arbitrarily attenuated by internal system gains even when these are much smaller than the gains multiplying retroactivity terms. This result is obtained by employing a suitable change of coordinates and a nested application of the singular perturbation theorem on the finite time interval. As an application example, we show that two modules extracted from natural signal transduction pathways have a remarkable capability of attenuating retroactivity, which is certainly desirable in any (engineered or natural) signal transmission system.
  • Keywords
    biochemistry; biomolecular electronics; molecular biophysics; perturbation theory; biomolecular system; finite time interval; natural signal transduction pathways; retroactivity attenuation; signal transmission system; singular perturbation theorem; timescale separation; Attenuation; Biological system modeling; Equations; Impedance; Modeling; Proteins; Systems biology; Bio-molecular system; retroactivity;
  • fLanguage
    English
  • Journal_Title
    Automatic Control, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    0018-9286
  • Type

    jour

  • DOI
    10.1109/TAC.2010.2069631
  • Filename
    5555943