DocumentCode :
1326590
Title :
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes
Author :
Kong, Jun ; Cooper, Lee A D ; Wang, Fusheng ; Gutman, David A. ; Gao, Jingjing ; Chisolm, Candace ; Sharma, Ashish ; Pan, Tony ; Van Meir, Erwin G. ; Kurc, Tahsin M. ; Moreno, Carlos S. ; Saltz, Joel H. ; Brat, Daniel J.
Author_Institution :
Center for Comprehensive Inf., Emory Univ., Atlanta, GA, USA
Volume :
58
Issue :
12
fYear :
2011
Firstpage :
3469
Lastpage :
3474
Abstract :
Multimodal, multiscale data synthesis is becoming increasingly critical for successful translational biomedical research. In this letter, we present a large-scale investigative initiative on glioblastoma, a high-grade brain tumor, with complementary data types using in silico approaches. We integrate and analyze data from The Cancer Genome Atlas Project on glioblastoma that includes novel nuclear phenotypic data derived from microscopic slides, genotypic signatures described by transcriptional class and genetic alterations, and clinical outcomes defined by response to therapy and patient survival. Our preliminary results demonstrate numerous clinically and biologically significant correlations across multiple data types, revealing the power of in silico multimodal data integration for cancer research.
Keywords :
brain; cancer; data integrity; genomics; image representation; large-scale systems; medical image processing; neurophysiology; tumours; TCGA molecular data; biologically significant correlations; cancer genome atlas project; complementary data types; genetic alterations; genotypic signatures; glioblastoma; high-grade brain tumor; in silico approaches; in silico multimodal data integration; integrative analysis; microscopic slides; multimodal analysis; multiple data types; multiscale data synthesis; nuclear phenotypic data; pathology imaging; translational biomedical research; Cancer; Databases; Genetics; Microscopy; Pathology; Tumors; Cluster analysis; glioblastoma (GBM); in silico; multimodal data process; translational integration; Atlases as Topic; Brain Neoplasms; Cluster Analysis; Computational Biology; Computer Simulation; Database Management Systems; Databases, Factual; Gene Expression Profiling; Genotype; Glioblastoma; Humans; Kaplan-Meier Estimate; Microscopy; Phenotype;
fLanguage :
English
Journal_Title :
Biomedical Engineering, IEEE Transactions on
Publisher :
ieee
ISSN :
0018-9294
Type :
jour
DOI :
10.1109/TBME.2011.2169256
Filename :
6025272
Link To Document :
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