DocumentCode
1336176
Title
Tool that integrates distance based programs for reconstructing phylogenetic trees
Author
Torres, Miguel ; Dias, Guilherme ; Goncalves, Gil ; Vieira, Camilo
Author_Institution
Univ. Estaudal de Santa Cruz, Ilheus, Brazil
Volume
9
Issue
5
fYear
2011
Firstpage
895
Lastpage
901
Abstract
The main existing methods for reconstructing phylogenetic trees are based on maximum likelihood, Bayesian inference, maximum parsimony or distance. There are many distance based programs for phylogenetic trees reconstruction. The five most important distance based programs were selected: NJ, BioNJ, UPGMA, Weighbor and FastME. Synthetic data sets were applied in order to evaluate the distance-based methods under consideration. Then, the tool DiGrafu was developed, so as to exploit the best characteristics of these programs. Besides, the validation of this proposed solution was presented using real data.
Keywords
belief networks; bioinformatics; inference mechanisms; maximum likelihood estimation; software tools; trees (mathematics); Bayesian inference; BioNJ; DiGrafu tool; FastME; UPGMA; Weighbor; bioinformatics; distance based programs; maximum likelihood; maximum parsimony; phylogenetic trees reconstruction; synthetic data sets; Bayesian methods; Bioinformatics; Biological system modeling; Computational modeling; DNA; Phylogeny; bioinformatics; distance methods; phylogenetic tree reconstruction;
fLanguage
English
Journal_Title
Latin America Transactions, IEEE (Revista IEEE America Latina)
Publisher
ieee
ISSN
1548-0992
Type
jour
DOI
10.1109/TLA.2011.6031006
Filename
6031006
Link To Document