• DocumentCode
    1336176
  • Title

    Tool that integrates distance based programs for reconstructing phylogenetic trees

  • Author

    Torres, Miguel ; Dias, Guilherme ; Goncalves, Gil ; Vieira, Camilo

  • Author_Institution
    Univ. Estaudal de Santa Cruz, Ilheus, Brazil
  • Volume
    9
  • Issue
    5
  • fYear
    2011
  • Firstpage
    895
  • Lastpage
    901
  • Abstract
    The main existing methods for reconstructing phylogenetic trees are based on maximum likelihood, Bayesian inference, maximum parsimony or distance. There are many distance based programs for phylogenetic trees reconstruction. The five most important distance based programs were selected: NJ, BioNJ, UPGMA, Weighbor and FastME. Synthetic data sets were applied in order to evaluate the distance-based methods under consideration. Then, the tool DiGrafu was developed, so as to exploit the best characteristics of these programs. Besides, the validation of this proposed solution was presented using real data.
  • Keywords
    belief networks; bioinformatics; inference mechanisms; maximum likelihood estimation; software tools; trees (mathematics); Bayesian inference; BioNJ; DiGrafu tool; FastME; UPGMA; Weighbor; bioinformatics; distance based programs; maximum likelihood; maximum parsimony; phylogenetic trees reconstruction; synthetic data sets; Bayesian methods; Bioinformatics; Biological system modeling; Computational modeling; DNA; Phylogeny; bioinformatics; distance methods; phylogenetic tree reconstruction;
  • fLanguage
    English
  • Journal_Title
    Latin America Transactions, IEEE (Revista IEEE America Latina)
  • Publisher
    ieee
  • ISSN
    1548-0992
  • Type

    jour

  • DOI
    10.1109/TLA.2011.6031006
  • Filename
    6031006