Title :
Computational challenges in simulating large DNA over long times
Author :
Schlick, Tamar ; Beard, Daniel A. ; Huang, Jing ; Strahs, Daniel A. ; Qian, Xiaoliang
Author_Institution :
New York Univ., NY, USA
Abstract :
Simulating DNA´s dynamics requires a sophisticated array of algorithms appropriate for DNA´s impressive spectrum of spatial and temporal levels. The authors describe computational challenges, solution approaches, and applications that their group has performed in DNA dynamics simulation
Keywords :
DNA; biochemistry; biology computing; chemistry computing; digital simulation; DNA dynamics simulation; computational challenges; large DNA; solution approaches; temporal levels; Bioinformatics; Biological system modeling; Biology computing; Computational modeling; DNA computing; Genomics; Molecular biophysics; Proteins; RNA; Sequences;
Journal_Title :
Computing in Science & Engineering
DOI :
10.1109/5992.881706
