• DocumentCode
    1407899
  • Title

    Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy

  • Author

    Temerinac-Ott, Maja ; Ronneberger, Olaf ; Ochs, Peter ; Driever, Wolfgang ; Brox, Thomas ; Burkhardt, Hans

  • Author_Institution
    Dept. of Comput. Sci., Univ. of Freiburg, Freiburg, Germany
  • Volume
    21
  • Issue
    4
  • fYear
    2012
  • fDate
    4/1/2012 12:00:00 AM
  • Firstpage
    1863
  • Lastpage
    1873
  • Abstract
    We propose an algorithm for 3-D multiview deblurring using spatially variant point spread functions (PSFs). The algorithm is applied to multiview reconstruction of volumetric microscopy images. It includes registration and estimation of the PSFs using irregularly placed point markers (beads). We formulate multiview deblurring as an energy minimization problem subject to L1-regularization. Optimization is based on the regularized Lucy-Richardson algorithm, which we extend to deal with our more general model. The model parameters are chosen in a profound way by optimizing them on a realistic training set. We quantitatively and qualitatively compare with existing methods and show that our method provides better signal-to-noise ratio and increases the resolution of the reconstructed images.
  • Keywords
    fluorescence; image registration; image resolution; image restoration; medical image processing; optical microscopy; optical transfer function; optimisation; 3D images; 3D multiview deblurring; Lucy-Richardson algorithm; PSF; energy minimization problem; image reconstruction; image registration; image resolution; light-sheet-based fluorescence microscopy; model parameters; multiview reconstruction; optimization; point markers; realistic training set; signal-to-noise ratio; spatially variant point spread functions; volumetric microscopy images; Estimation; Image reconstruction; Image restoration; Kernel; Microscopy; Three dimensional displays; Vectors; 3-D images; Deblurring with spatially variant point spread function (PSF); L1-regularization; PSF estimation; deconvolution; fluorescence microscopy; registration with irregularly placed point markers; tomography; Algorithms; Artificial Intelligence; Image Enhancement; Image Interpretation, Computer-Assisted; Imaging, Three-Dimensional; Microscopy, Fluorescence; Pattern Recognition, Automated; Reproducibility of Results; Sensitivity and Specificity;
  • fLanguage
    English
  • Journal_Title
    Image Processing, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    1057-7149
  • Type

    jour

  • DOI
    10.1109/TIP.2011.2181528
  • Filename
    6112225