DocumentCode
151659
Title
DNA inspired bi-directional Lempel-Ziv-like compression algorithms
Author
Mahmood, Arif ; Islam, Nahina ; Nigatu, Dawit ; Henkel, Werner
Author_Institution
Electr. Eng. & Comput. Sci., Jacobs Univ. Bremen, Bremen, Germany
fYear
2014
fDate
18-22 Aug. 2014
Firstpage
162
Lastpage
166
Abstract
The bi-directional reading processes in DNA replication and gene expression together with the similarities between the so-called alternative splicing and Lempel-Ziv (LZ) algorithms has motivated us to incorporate bi-directional readings into LZ algorithms. LZ77, LZ78, and LZW84 are universal lossless data compression algorithms. A modified version of these algorithms that takes into account both forward and reverse readings is presented in this work. It is shown that bi-directional reading can improve the compression ratio at the expense of slight modifications in LZ algorithms provided that there exists some symmetry in the information content. Results are presented for text, image, and audio files.
Keywords
biocomputing; data compression; DNA replication; alternative splicing algorithm; audio files; bi-directional Lempel-Ziv-like compression algorithms; gene expression; image files; text files; universal lossless data compression algorithms; Bidirectional control; DNA; Dictionaries; Image coding; Indexes; Proteins; RNA;
fLanguage
English
Publisher
ieee
Conference_Titel
Turbo Codes and Iterative Information Processing (ISTC), 2014 8th International Symposium on
Conference_Location
Bremen
Type
conf
DOI
10.1109/ISTC.2014.6955106
Filename
6955106
Link To Document