Title :
Spherical harmonic molecular surfaces
Author :
Max, Nelson L. ; Getzoff, Elizabeth D.
Author_Institution :
Lawrence Livermore Nat. Lab., Davis, CA, USA
fDate :
7/1/1988 12:00:00 AM
Abstract :
Starlike surfaces can be defined in spherical coordinates by a function r( theta , phi ) on the unit sphere, which can be expanded in spherical harmonics to give a consequence of smooth approximations to the surface. This method has been used to approximate the solvent-accessible surface of a molecule. The coefficients in the expansion provide a small collection of numbers that characterize the molecular shape. The resulting smooth surfaces can be rendered with random dots or smooth shading. These spherical harmonic surfaces have advantages for modeling overall molecular shape, particularly time-averaged shapes relevant to electrostatic and other intermolecular interactions.<>
Keywords :
computer graphics; molecular configurations; physics computing; potential energy curves and surfaces of molecules; computer graphics; molecular shape; smooth approximations; solvent-accessible surface; spherical coordinates; spherical harmonic molecular surfaces; spherical harmonics; Atomic measurements; Computer graphics; Electrons; Ellipsoids; Probes; Proteins; Rough surfaces; Shape; Surface reconstruction; Surface roughness;
Journal_Title :
Computer Graphics and Applications, IEEE