DocumentCode :
1565103
Title :
An experimental comparison of two approximation algorithms for the common superstring problem
Author :
Romero, Heidi J. ; Brizuela, Carlos A. ; Tchernykh, Andrei
Author_Institution :
Dept. of Comput. Sci., CICESE Res. Center, Ensenada, Mexico
fYear :
2004
Firstpage :
27
Lastpage :
34
Abstract :
The paper deals with an experimental comparison of a 4-approximation algorithm with a 3-approximation algorithm for the shortest common superstring (SCS) problem. It has two main objectives, one is to show that even though the quotient between the two approximations is 4/3, in the worst case, the average results quotient is approximately 1, independently of the instances size. The second objective is to experimentally show that these algorithms produce high quality solutions, which are significantly lower than their guaranteed worst case bound. Most of the extensive computational experiments show that the algorithms produce an average superstring of length at most 1.4% over the optimum.
Keywords :
approximation theory; computational complexity; NP-hard problem; approximation algorithms; shortest common superstring problem; worst case bound; Approximation algorithms; Assembly; Computer science; DNA; Data compression; Greedy algorithms; Performance analysis; Polynomials;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computer Science, 2004. ENC 2004. Proceedings of the Fifth Mexican International Conference in
Print_ISBN :
0-7695-2160-6
Type :
conf
DOI :
10.1109/ENC.2004.1342585
Filename :
1342585
Link To Document :
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