Title :
Client Side Decompression Technique Provides Faster DNA Sequence Data Delivery
Author :
Sufi, Fahim ; Fang, Qiang ; Cosic, Irena ; Ferguson, Roy
Author_Institution :
Sch. of Electr. & Comput. Eng., R. Melbourne Inst. of Technol., Vic.
Abstract :
DNA sequences are generally very long chains of sequentially linked nucleotides. There are four different nucleotides and combinations of these build the nucleotide information of sequence files contained in data sources. When a user searches for any sequence for an organism, a compressed sequence file can be sent from the data source to the user. The compressed file then can be decompressed at the client end resulting in reduced transmission time over the Internet. A compression algorithm that provides a moderately high compression rate with minimal decompression time is proposed in this paper. We also compare a number of different compression techniques for achieving efficient delivery methods from an intelligent genomic search agent over the Internet
Keywords :
DNA; Internet; biology computing; genetics; molecular biophysics; molecular configurations; Internet; client side decompression technique; compressed sequence file; data sources; faster DNA sequence data delivery; intelligent genomic search agent; nucleotides; Bioinformatics; Compression algorithms; DNA; Data compression; Dictionaries; Genomics; Internet; Organisms; Pattern matching; Sequences;
Conference_Titel :
Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. 27th Annual International Conference of the
Conference_Location :
Shanghai
Print_ISBN :
0-7803-8741-4
DOI :
10.1109/IEMBS.2005.1617059