Title :
Physical understanding via reduction of complex multiscale models: Glycolysis in saccharomyces cerevisiae
Author :
Kourdis, Panayotis D. ; Goussis, Dimitris A. ; Steuer, Ralf
Author_Institution :
Sch. of Appl. Math. & Phys., Nat. Tech. Univ., Athens
Abstract :
We consider complex mathematical models that are characterized by a wide spectrum of time scales, the fastest of which are operative during the initial state only, leaving the slower ones to drive the system at later times. It is shown that very useful physical understanding can be acquired if the fast and slow dynamics are first separated and then analyzed. Existing algorithmic methodologies can be applied for this purpose. A demonstration of this approach is presented for a glycolysis model, the solution of which asymptotically evolves around a limit cycle.
Keywords :
biology computing; microorganisms; reduced order systems; sugar; complex multiscale model reduction; glycolysis; saccharomyces cerevisiae; Algorithm design and analysis; Biological system modeling; Computational biology; Evolution (biology); Fungi; Genetics; Iterative algorithms; Limit-cycles; Mathematical model; Size measurement;
Conference_Titel :
BioInformatics and BioEngineering, 2008. BIBE 2008. 8th IEEE International Conference on
Conference_Location :
Athens
Print_ISBN :
978-1-4244-2844-1
Electronic_ISBN :
978-1-4244-2845-8
DOI :
10.1109/BIBE.2008.4696657